![]() ![]() If you are certain your file is intact, please submit an error report to the CLC Support team. The command name and the syntax for running the md5 check on Mac OS X is Will write the documentation for the tool to your terminal. To generate the md5 checksum for a given file. On most systems, you could just be able to run the command We are not specifically suggesting this tool over others, but if you do not already have a tool installed, the above is one you could try. We are aware that a tool among Windows users for generating md5 checksums is md5summer, which can be downloaded from: Some are provided on the Wikipedia page about checksums. We include a couple of the possibilities below. There are a variety of tools that one can install and run to find out the md5 checksum for a file. The only solution in this case is to get a new copy of the data. If they are different, then, in the case of sequencing data files for example, this would suggest there was a problem when copying the data. If the two checksums are the same, then the two files are the same. ![]() One way to test that the data file has not been corrupted on transfer is to get the md5 checksum for the original file and compare it to the md5 checksum of the copy of the file you are working with. This is a relatively frequent occurrence when transferring large files, as is commonplace when working with high throughput sequencing data. ![]() While there can be other reasons behind it, errors related to the import of large files indicating that they are not recognized as valid are often associated with data corruption and in particular file truncation.
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